Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs12774985 chr10:904245 C/T 2.09E-7 505 21.7 26.23 14.15 KM Plot
LGG rs12778271 chr10:932988 T/C 3.2E-7 504 21.77 25.83 14.5 KM Plot
LGG rs12778891 chr10:950130 T/A 3.07E-7 498 21.77 24.23 14.43 KM Plot
LGG rs12922295 chr16:8715243 A/G 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs13220972 chr7:20711258 T/C 3.19E-5 492 24.5 21.13 14.27 KM Plot
LGG rs13238268 chr7:20703658 T/C 3.0E-6 487 23.72 22.3 14.47 KM Plot
LGG rs13245367 chr7:29665560 G/T 4.06E-5 503 21.7 27.3 8.97 KM Plot
LGG rs13250395 chr8:6188102 T/C 1.69E-5 508 21.85 24.05 7.72 KM Plot
LGG rs13250420 chr8:6188131 T/C 1.73E-5 507 21.83 24.28 7.72 KM Plot
LGG rs13255623 chr8:143416759 G/A 1.2E-5 495 23.83 18.8 3.7 KM Plot
LGG rs13257459 chr8:143416655 C/T 1.2E-5 495 23.83 18.8 3.7 KM Plot
LGG rs13264885 chr8:6187129 G/T 2.15E-5 500 21.85 24.05 7.72 KM Plot
LGG rs13267571 chr8:6187306 C/T 2.15E-5 500 21.85 24.05 7.72 KM Plot
LGG rs13268051 chr8:6187111 A/G 2.15E-5 499 21.83 24.28 7.72 KM Plot
LGG rs13274304 chr8:6187980 G/C 1.73E-5 507 21.83 24.05 7.72 KM Plot